Following are the lakes whose name begins with "E" which are included in the 1999 LAKEWATCH Report. Click on the lake name to go to the page containing information on that lake.
| Lake | County |
| E | Dade |
| Eagle | Polk |
| Eagle Pond | Highlands |
| East | Hillsborough |
| East | Pasco |
| East | Putnam |
| East Bay | Bay |
| East Crooked | Lake |
| East Crystal | Seminole |
| East Nassau | Nassau |
| East Rocks | Lee |
| East Rocks West | Lee |
| Eastern | Walton |
| Eaton | Marion |
| Echo | Hillsborough |
| Echo | Marion |
| Eckles | Hillsborough |
| Egypt | Hillsborough |
| Elbert | Polk |
| Eldorado | Lake |
| Elizabeth | Hillsborough |
| Elizabeth | Leon |
| Ellen | Hillsborough |
| Ellen | Wakulla |
| Eloise | Polk |
| Emeralda | Lake |
| Emma | Lake |
| Emma | Seminole |
| Emporia | Volusia |
| English | Putnam |
| Eola | Orange |
| Erie | Leon |
| Estelle | Orange |
| Estelle East | Orange |
| Estes | Hillsborough |
| Eulalia | Orange |
| Eustis | Lake |
| Eve | Orange |